rs223079589 SNP Detail

Summary

• ID
  rs223079589
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:125642271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAATATTGT GTTTGTACTT
  AAACACCTAA AGTGATTAAA TTAACTGGAT AATTATTAAA AACCCAGCTC AACTTGTAAT
  GTCCACATAA CTTTTACACC CAGCTGTCAC CTCCCTCAAC CCCTGCCAGC TTCTTGATAG
  ATTTTTATTC CAAAGAGTAA ATAGGAGAGT CATAGAAAAA TAAAATAGAT TGGCCTTTAT
  R
  CAGTCAGAAT AGCTTTCTGA AAATAAATTT GAGATTAAAC AATGTTTGAA AACCACTCCT
  GATTTCTGTT AGCATATGCA CCTTTGAAGA CAGGCTCTGG CAGTCTCCAG CATAGTCTTT
  TCTTGACTAA AAGGTGTTCA TAGTACTAAA TGAATAAATT TGCTAAAAAT ATAGATAATT
  TTGGTTTTTT GCAGGATGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320940417	CHEV_3_125551540	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223079589					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:125642271 () rs orientation: forward

Symbol	Name	Function Class
Rr584614	regulatory region 584614	618 bp proximal
Rr584615	regulatory region 584615	718 bp proximal