rs223077828 SNP Detail

Summary

• ID
  rs223077828
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:53155241 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGTCCCC CTTGAGCGCC
  TTTGCCTTAG GCTCACTATG ACAAAGAACT GCTCAGCCAC ACCTTCTCCA TCCAATGGAC
  TAAAAGCCCC AGAAACCGGG AGCCCAAAGG AATCCACCCT TCCTTAGATT GCCTCTTCAG
  AAGGTTTGTC CTAGGCAAGA AGTAGTAGCT GATACAGCAC GTAGTCACGG TTGCATATAC
  A
  GTGTAGGTGA ATAGTCAAGT TTAAGTGTTT CTCTGCAATT AGCAGAGACA CTAGCTTGCT
  TTAGTGTGGG AATCGGGATG TTATATATCA TAAACAAAGC CAGCCGCCGA GTGTAGTGAC
  ATGCTGAGGA GAGCACTTTT GAGAGACCTG GGAAAGTCAC CAGTGTCCTG GATACCTATC
  CTCGTGATTA AAACACAAAA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320767207	CHEV_3_53051742	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223077828					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53155241 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lhfpl6	LHFPL tetraspan subfamily member 6			Intron
				Noncoding-Transcript-Variant
Rr576668	regulatory region 576668			430 bp distal
Rr576669	regulatory region 576669			511 bp distal