rs223062941 SNP Detail

Summary

• ID
  rs223062941
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135796053 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAACTCCAG GTCATTTCTT
  GCTTTCCTCC AGTGGGTCCT GACTCGCGTG ATTACTCATT ATTTTGCCTT ATTGTGTTTT
  AGTTTTTGTT GCTAGAGACG GAATCCAGGG CCTTGCACAT GAGGAGCAAG TGAGTTACTG
  CCCAGCCACA CCCCAAACTA TTAAAGCAAG CTGTTGGCCT GTTGCTTCCT GTTTTGTTTT
  Y
  AGTTGGGAAA AAAGGTGAGA GTTAAGCAAA GACACACACA TACACACAGG CACCCACATG
  CATACACACA CATACACTAT ATACACACAT GTATGCACGC ATGCACAGGC ACACACACAT
  AGGCACACAC ACATATACCC CACACATGCA TACACCACAC ACACACATGC ATGCATGCAT
  GCATATGCAC ACAATGCATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363382097	MGP_WTSI_4_135624657	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	T	T	C	T	T	T	T	T	T	T	T	C	C	T	T	T	C	T	T	C	C	T	T	T	C	C	T	T	C	T	C	T	T	T	C	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223062941					SNP	C	C	T	T	C	T	T	T	T	T	T	T	T	C	C	T	T	T	C	T	T	C	C	T	T	T	C	C	T	T	C	T	C	T	T	T	C	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363382097	MGP_WTSI_4_135624657	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135796053 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15093	CpG island 15093	1248 bp proximal
Rr602257	regulatory region 602257	1086 bp proximal
Rr602258	regulatory region 602258	1370 bp proximal