rs223014641 SNP Detail

Summary

• ID
  rs223014641
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:22199403 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTACAAGT TTAAAGTTTT
  CTCTTTTTTT TTCTTTTTCT TTTTTGTGAT TTGCTTTTTA AATGTGCTGC ACAGCACTTA
  GGTGGCCATA AGCAAATACG ATCCTTCATC TTAGAATTGT GATATGGCCT TCAGTGTGTT
  GCTAGGAAAT CCTTTCGTTT AGGTTAAACT ACCTGTACAC AGCTGTGTCT ATCTGCTTTT
  Y
  CCCCCCCCGA CAGACAGGGT CTCTCTGTAT AGCCCTGGCT GTACTGGAAC TCACTTTGTA
  GACCACGCTG GCCTCGAACT CAGAAATCTG CCTGCCTCTG CTTCCTGGCT CTCTGTCTGC
  TTTTTACTGA AGATGAACTT GCTCTTGATG CCATAGAAAC AGTTTTATAC TTAACTATTT
  AAGTGATATT TACCTTAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320684113	CHEV_3_22044161	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223014641					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:22199403 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr574213	regulatory region 574213			1526 bp distal
Rr574214	regulatory region 574214			1773 bp distal
Rr574215	regulatory region 574215			690 bp distal
Rr574216	regulatory region 574216			774 bp distal
Tbl1xr1	Tbl1x/y related 1			Intron
				Noncoding-Transcript-Variant