rs222979050 SNP Detail

Summary

• ID
  rs222979050
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54536800 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTTTGAC CTCCCTGGCA
  CCCATTCATG TATAACCCCA CACACATATA CACATAATTA AAAATAAGAA AAATAAATAT
  TCTTAAGAGC ATAGTATAAA TAATAACGTA GTCATTAATC ATTACCAAAT ATTTTCTGGC
  ATTGGGTATA GTAATACACA CCTCTAATTG CACCACTTGG AAGGCAGAGG CAGGCTGAGC
  K
  CTGAGGTCTG GCCTAGCCTA GTCTATATAG TAAGTTCCAG GCCAGCCAGA GCTGCACAGC
  GTGACCCTGT CTCAAGAAGT TTGTTTGTTT GTTTGTTTTT TTCAGCACAT GGTGGTAGTG
  CTAGACGTAC ACAGTTTGCA TGTTACACCA GCCATCACCA AGACACGTGA CAGATTACTT
  CATCATGTTG TAACCTTACA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320772248	CHEV_3_54433301	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222979050					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54536800 () rs orientation: forward

Symbol	Name	Function Class
Rr576819	regulatory region 576819	969 bp proximal