rs222976902 SNP Detail

Summary

• ID
  rs222976902
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155379812 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCGTCTCTG TCTCACTCAG
  TGCTGGGGTT GCAGGCATGC CTGGCCAAGC CTGCCTTGCT TGTTTTGTGG GTGCTGGGAT
  CTAAACTCAG GCTCTCAAGG TCGTGCAGCA AGCCCTCTCG GCCACTGAGC CATCTCTCCA
  GCCCAATCTT AAACTTCTGG CTGCCCTGCC TCTGTTTCCG TGAGTGCTGG GATCACAGGC
  R
  CTGTGGCGCC TCCTGGGGGT GGAATTCTGG GACTTGACTC TGCGAGAGCA ACCACTCTGC
  ATATTGAGAG ATATCTCCAG GGATAGACTG AGCTCTATCA GCAGCCTCTC GAATCTTTTG
  GGGGAAAGGT CTTGATATAT AGCCCAGGCT TGTCTTAGCC TCAGTGCTGT GCTTACAGGT
  CTGTCAGGAG AGTCACTCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321441561	CHEV_4_154669464	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222976902					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155379812 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Prkcz	protein kinase C, zeta			Intron
				Noncoding-Transcript-Variant
Rr606443	regulatory region 606443			322 bp proximal
Rr606444	regulatory region 606444			897 bp proximal
Rr606445	regulatory region 606445			1638 bp proximal
Rr606446	regulatory region 606446			1935 bp proximal