rs222952222 SNP Detail

Summary

• ID
  rs222952222
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:119494059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTAAAAGAG CCAAATTAAG
  AAGTAAAAGT AAGCCTGACA TGGTAGTCCA TACCTTTATT CCAGCTCTGG GGAAGCAGGG
  GTATTTGTAT CTCTGGGAGT TCCAGGCCAT AATTTCCTGG TAGCTATCTA AGTATAGGTA
  TATAGGTATA AAGGTGTGTG TGTGTGTGTG TATGTGTGTG TGTGAGAGAG AGGGCGGGGG
  R
  GAGCACCACA GTCCCTCTAA TCACGTTCAA CTTTCATCCC ATAGAAAGGT TGAGGCCCCT
  CACTCTTCCA ATAAAACAGT CTCAGCCTTT TGAGTCTGTC TCTTCGCCTA ATTTTTCTTA
  TAAGAACTGT GAAAATCTGT TTCCCAGAGA CAATTTGGGG GGTTGGTTGG TTGGTTGGTT
  TTTGCTTTTT CCTTTTCCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CZECHII/EiJ	JF1/MsJ	LG/J	MOLF/EiJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi5/Ianm
ss355434338	MGP_WTSI_2_119489314	EVA_MGPV3	EVA_MGPV3	f	SNP	G	A	A	G	G	G	G	G	G	G	G	G	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CZECHII/EiJ	JF1/MsJ	LG/J	MOLF/EiJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi5/Ianm
rs222952222					SNP	G	A	A	G	G	G	G	G	G	G	G	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355434338	MGP_WTSI_2_119489314	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119494059 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12124	CpG island 12124	625 bp distal
Gm75025	predicted gene, 75025	1526 bp downstream
Gm75032	predicted gene, 75032	1515 bp upstream
Ndufaf1	NADH:ubiquinone oxidoreductase complex assembly factor 1	757 bp upstream
Rr397235	regulatory region 397235	606 bp downstream
Rr563557	regulatory region 563557	791 bp distal
Rr563558	regulatory region 563558	267 bp distal
Tssr25825	transcription start site region 25825	743 bp upstream