rs222906556 SNP Detail

Summary

• ID
  rs222906556
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101867938 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTGCCTT TGTCTAAGAC
  ACACGAGGAG GCAGGCACAC AGGTTCAACT GCAAAAGGTT CACGGTGAGG CAGGGCAGCC
  TGTGTGACCC AGGTGAGCAG GGCAGAGGTA GGAGCACCCG GAGAGGCCCT GAGGCAAGAG
  CATGGCGAGT CTGAGAAACA GAAAGGAGAT TTTTCGCTGT GGGAGAAGTG GAGGTCACAC
  R
  TAGCTGAGAG ACTAAAAGGG CATTGTGTAG TTCACAGTGA AAAGTACGGC CACGGGGGCG
  GGGGAGTGAT TTAGGTTTGC AAGCATTCGG ACCTATATAA AGAAAAAGTG TGATGGTGAA
  TGTTTATAGT CCCAGAAATT GGGAGGTAAA GACAGGAGGA TTCCTGGGGT TCACTGACCA
  ACCTACCCTG GGCGAACCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320433826	CHEV_2_101877750	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222906556					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101867938 () rs orientation: forward

Symbol	Name	Function Class
Ldlrad3	low density lipoprotein receptor class A domain containing 3	Intron
Rr367252	regulatory region 367252	1819 bp upstream
Rr561615	regulatory region 561615	within coordinates
Rr561616	regulatory region 561616	538 bp distal
Rr561617	regulatory region 561617	1344 bp proximal
Rr561618	regulatory region 561618	1456 bp proximal