rs222895141 SNP Detail

Summary

• ID
  rs222895141
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:110251927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCAGCGGG AAGCCTCCTC
  ATTCTCCCAG AGCCAAAGTC CTGCCCACAT CAGTTCACTC ATAATCTTCA AACCACATTG
  GTATTACCTG CTGTGTCCCC AGCCAGACAA CCCTGTATCT ATTCACAGCT GGGCCTCCCG
  GGCCAGTTGC AGGTAGAATG AATATTTCAA TGATGTGTCC CTGGAATCCT GGGAGGACAG
  W
  ACCCTGTAGA CTCCTGCTCT CTGCCTAGTC ACTGTGACAC CAAATGCCCC TTTACATACC
  CAGATCCCTT AATGGGGATG TGGCAGGTGG GTGTGGTCAG ATCACCTTGT GAGGCCTATA
  AGAGAGGTTC AATAAAAATG CTTCTGAGAT TAATGACGAT GTGGCTGGAT GATGCACAGG
  TCCTGGGATG GCTGAACTTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378902797	MGP_WTSI_9_110325363	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222895141					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378902797	MGP_WTSI_9_110325363	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110251927 () rs orientation: forward

Symbol	Name	Function Class
Ngp	neutrophilic granule protein	mRNA-UTR
Tssr3020	transcription start site region 3020	1970 bp downstream
Tssr3021	transcription start site region 3021	1563 bp upstream
Tssr3022	transcription start site region 3022	1116 bp upstream
Tssr3023	transcription start site region 3023	477 bp upstream
Tssr3024	transcription start site region 3024	459 bp upstream
Tssr3025	transcription start site region 3025	370 bp upstream
Tssr3026	transcription start site region 3026	321 bp upstream
Tssr3027	transcription start site region 3027	224 bp upstream
Tssr3028	transcription start site region 3028	158 bp upstream
Tssr3029	transcription start site region 3029	142 bp upstream
Tssr3030	transcription start site region 3030	131 bp upstream
Tssr3031	transcription start site region 3031	37 bp downstream
Tssr87364	transcription start site region 87364	1975 bp downstream
Tssr87365	transcription start site region 87365	1941 bp downstream
Tssr87366	transcription start site region 87366	1152 bp downstream
Tssr87367	transcription start site region 87367	1114 bp downstream
Tssr87368	transcription start site region 87368	581 bp downstream
Tssr87369	transcription start site region 87369	563 bp downstream
Tssr87370	transcription start site region 87370	513 bp downstream
Tssr87371	transcription start site region 87371	485 bp downstream
Tssr87372	transcription start site region 87372	415 bp downstream
Tssr87373	transcription start site region 87373	375 bp downstream
Tssr87374	transcription start site region 87374	353 bp downstream
Tssr87375	transcription start site region 87375	330 bp downstream
Tssr87376	transcription start site region 87376	324 bp downstream
Tssr87377	transcription start site region 87377	310 bp downstream
Tssr87378	transcription start site region 87378	259 bp downstream
Tssr87379	transcription start site region 87379	214 bp downstream
Tssr87380	transcription start site region 87380	within coordinates
Tssr91616	transcription start site region 91616	1985 bp upstream
Tssr91617	transcription start site region 91617	1960 bp upstream
Tssr91618	transcription start site region 91618	1940 bp upstream
Tssr91619	transcription start site region 91619	529 bp upstream
Tssr91620	transcription start site region 91620	425 bp upstream
Tssr91621	transcription start site region 91621	346 bp upstream
Tssr91622	transcription start site region 91622	284 bp upstream
Tssr91623	transcription start site region 91623	149 bp downstream