rs2228908 SNP Detail

Summary

• ID
  rs2228908
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  98
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121997658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACCCACATC TCTCACCTTC CTAAAGTTAT TTGCTGGAAG
  CAAGATAGTC TGTCCCAGCA GACTGCCTTT CCTAGGATGA CAAAGCTGAG TGTCTGTGGT
  W
  CTGTAGGGAT CCTGTTTTAT GACTGAAGCA CGCTGTCACC CTGAACTCGG GGAGTAGGGC
  TGGAATAATC AAGAGGCCGA GCTGAGACTC TGGTTTCTT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J	SPRET/EiJ
ss3175868	M-6C	MITCCR	Mouse_(BJ)	f	SNP			T				A
ss135737015	ENSMUSSNP1488351	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		A
ss320909579	CHEV_3_121906927	CHEVERUD	SCREENING_POP	f	SNP					T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J	SPRET/EiJ
rs2228908					SNP	T	T	T	A	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121997658 () rs orientation: forward

Symbol	Name	Function Class
D3Jor1	DNA segment, Chr 3, Barbara Jordan 1	within coordinates
Gm43158	predicted gene 43158	within coordinates
Gm46822	predicted gene, 46822	within coordinates
Rr584257	regulatory region 584257	1229 bp distal
Rr584258	regulatory region 584258	364 bp distal
Rr584259	regulatory region 584259	1881 bp proximal