rs2228907 SNP Detail

Summary

• ID
  rs2228907
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  98
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121997615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGTTCATA GAGCGGGGCA
  GTCTCTCTCC CTTGGGAAAC TGAGGAGTCA GTCAGAGGGA AAAGCTGGTT GTGACTCGCT
  ATAGTGGTGG GGTGAGGGTT TAGGAATGAA GTTGTTGCAA TGTAATTCTG TCCTGCTGTC
  TCCAACCCAC ATCTCTCACC TTCCTAAAGT TATTTGCTGG AAGCAAGATA GTCTGTCCCA
  R
  CAGACTGCCT TTCCTAGGAT GACAAAGCTG AGTGTCTGTG GTTCTGTAGG GATCCTGTTT
  TATGACTGAA GCACGCTGTC ACCCTGAACT CGGGGAGTAG GGCTGGAATA ATCAAGAGGC
  CGAGCTGAGA CTCTGGTTTC TTTCCTCTTT CTCGATTTTA GGATTTGTTT ATCTATTTAT
  TTAAAGTCAC CTGGCAAGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	SPRET/EiJ
ss3175867	M-6B	MITCCR	Mouse_(BJ)	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	SPRET/EiJ
rs2228907					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121997615 () rs orientation: forward

Symbol	Name	Function Class
Gm43158	predicted gene 43158	within coordinates
Gm46822	predicted gene, 46822	within coordinates
Rr584257	regulatory region 584257	1186 bp distal
Rr584258	regulatory region 584258	321 bp distal
Rr584259	regulatory region 584259	1924 bp proximal