rs2228906 SNP Detail

Summary

• ID
  rs2228906
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  98
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121997571 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAGATAGG CGTCTGACCT
  TTAGCAGACA GGACTGTGTT TATTATTGTT CATAGAGCGG GGCAGTCTCT CTCCCTTGGG
  AAACTGAGGA GTCAGTCAGA GGGAAAAGCT GGTTGTGACT CGCTATAGTG GTGGGGTGAG
  GGTTTAGGAA TGAAGTTGTT GCAATGTAAT TCTGTCCTGC TGTCTCCAAC CCACATCTCT
  Y
  ACCTTCCTAA AGTTATTTGC TGGAAGCAAG ATAGTCTGTC CCAGCAGACT GCCTTTCCTA
  GGATGACAAA GCTGAGTGTC TGTGGTTCTG TAGGGATCCT GTTTTATGAC TGAAGCACGC
  TGTCACCCTG AACTCGGGGA GTAGGGCTGG AATAATCAAG AGGCCGAGCT GAGACTCTGG
  TTTCTTTCCT CTTTCTCGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	SPRET/EiJ
ss3175866	M-6A	MITCCR	Mouse_(BJ)	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	SPRET/EiJ
rs2228906					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121997571 () rs orientation: forward

Symbol	Name	Function Class
D3Jor1	DNA segment, Chr 3, Barbara Jordan 1	within coordinates
Gm43158	predicted gene 43158	within coordinates
Gm46822	predicted gene, 46822	within coordinates
Rr584257	regulatory region 584257	1142 bp distal
Rr584258	regulatory region 584258	277 bp distal
Rr584259	regulatory region 584259	1968 bp proximal