rs222877120 SNP Detail

Summary

• ID
  rs222877120
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:68401044 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTGGGGAC TTCCGCGTGG
  ACTGGGAGGC ATCGGGTCCG TGCGGGCCTC CAGGAGGCTT TGCTTGGATA AAGAGCCCAG
  CCAAGAGGCC TTGAGGTGCG TTCAGCACAC AACCCCCTCC CCAGGGCGCG GTCCTCCCAC
  ACAGCGAGGT CTGTAAACCT AGCGCCGCTA CCCTCCCTCC CCCGCCTCGC CTCGCCTCGC
  Y
  GCGCTCTCCC AGCCCGCTTC TAGCTCCAGC CTCCGGCGGG GAAAACCGGG CGAGCGGACT
  GCGCCGCACC CCGCAGCCTC TGGGCATGCT CCGTGGCGGG ACCCGGTCTG CCGCCGCCGC
  CGCCGCCGCC GCCGGGAGGG CGCGTCTTCC CTTCCCCAGG GCGGCGGCGC CTGCAGTGAC
  AGTCGCTGCG CGCCCGGGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358302066	MGP_WTSI_3_68297633	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222877120					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358302066	MGP_WTSI_3_68297633	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68401044 () rs orientation: forward

Symbol	Name	Function Class
Iqschfp	Iqcj and Schip1 fusion protein	Intron
Rr375142	regulatory region 375142	102 bp downstream
Rr578004	regulatory region 578004	994 bp distal
Rr578005	regulatory region 578005	7 bp proximal
Rr578006	regulatory region 578006	388 bp proximal
Rr578007	regulatory region 578007	440 bp proximal
Rr578008	regulatory region 578008	1763 bp proximal
Schip1	schwannomin interacting protein 1	Intron
Tssr898	transcription start site region 898	492 bp upstream
Tssr29457	transcription start site region 29457	441 bp downstream
Tssr29458	transcription start site region 29458	521 bp upstream
Tssr29459	transcription start site region 29459	572 bp upstream
Tssr33507	transcription start site region 33507	335 bp downstream