rs222851660 SNP Detail

Summary

• ID
  rs222851660
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:34073959 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGAGGCGAG GCCTGAGAAC
  TGCGTGAGGC TCGGGGGAAG CCCCGAGTCC CGGGTTCGTC CTGGGAAAGG CTCTTCAAGG
  GGACGGCCCG AGGCTCCAGA GGGAAGGCTC CATGAGGGCA AACCTGAGAG TGTCGGCCGG
  CCATGCGCTC TGGCCGAGCC CGAGCGCCCG CCAGGCCGCG CTTCCTGACG GGAAGAGCCC
  R
  TAGGGAGCGT CGCCGGCCGC GCGGATCCTG GGGCGAGGGT GGCGCGCCGG GCGGGTCCGC
  CTCACTCATT GTGCGCGAGG CGGGCCGCGC GGGCGTGGGC GTGGGCGGAC CGGCCTGCCG
  CTGGGTAGCC GCCCAAGGAC CCGCGCAGAG CGGCGCCGCT AGCGGAGAGC CCGGGAGCGG
  GCCGGGAGCG TCCCGCCCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357502397	MGP_WTSI_3_33918732	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222851660					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357502397	MGP_WTSI_3_33918732	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34073959 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13066	CpG island 13066	within coordinates
Fxr1	FMR1 autosomal homolog 1	174 bp upstream
Gm43077	predicted gene 43077	within coordinates
Rr575095	regulatory region 575095	23 bp distal
Rr575096	regulatory region 575096	within coordinates
Rr575097	regulatory region 575097	309 bp proximal
Tssr28785	transcription start site region 28785	59 bp upstream
Tssr28786	transcription start site region 28786	91 bp upstream
Tssr28787	transcription start site region 28787	107 bp upstream
Tssr28788	transcription start site region 28788	122 bp upstream
Tssr28789	transcription start site region 28789	137 bp upstream
Tssr28790	transcription start site region 28790	265 bp upstream
Tssr28791	transcription start site region 28791	273 bp upstream
Tssr32968	transcription start site region 32968	within coordinates