rs222742221 SNP Detail

Summary

• ID
  rs222742221
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101050747 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCTTGTGA GCTCAGGCCA
  CCTATTGCCA CATTCAGTGT GGCCTCTGCA GGGTAGATGC TCCACCTGAG ACTGGTGTGT
  CTGCCATTTC TAGCATATTG GCGGTGGTGC TGTGAGTATT ATTCCATTCA TGCCTTTGTT
  CCTTCCCAGT CCTTCAGCAA TGAGCAGTAC CTAGTGAGAT CCTTCCAGCT CCTGTTCTAA
  Y
  CTCCCAGGTA AGCTTGCCTG TAGGCCAAAG GTTATCAAAG TCACAGGTTG AATGGCCCTC
  CCCAGTCCGT AAAGAATCCA TAAAGATGAA TAAAAAGAGG AGCAAAGGAT TTGCTTTCAT
  TGCTTTTTAC ATGGTGACAA GCCAGAAATC ATCCGAGAGC CCAAAATAAG AGCCTTGGCT
  GAGTCAGTTT CAGTACCATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320851094	CHEV_3_100947354	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222742221					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101050747 () rs orientation: forward

Symbol	Name	Function Class
Rr581968	regulatory region 581968	1365 bp distal
Rr581969	regulatory region 581969	1459 bp proximal