rs222736643 SNP Detail

Summary

• ID
  rs222736643
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:101191435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCCTACCA ACTACGACAC
  ATTATATTGA AGTTCTTTTG ATAACTGTAT TGAATTGACA GAGTATCTTG AACAGAACCA
  TTTCTGGTAA ATAGACACAG GATATGAGTA AAATAGGCAT GGTGACGTGT GTTTATACAG
  CATCTCTGCC CTCCTGCGTT TTCACGTGGG GGTTGGGGGC GGGGGGGAGC CAGAAAGGAC
  R
  CTGCCCTTCC TAGCCCCAAG GTTCTGAGTT AATTTCTGGC CTTGAAGGAC TCCAACTTTA
  AGAAATGAGA AAATGGCTCC CTACCTGTCT CAAACCAGAC AACCTGTGAC CAAGCCCTGG
  ACAAGTCACC AGTCTCAGAC TCTCACTGCA AACTCCACAC CCCTCCTGCT TAACAGCCCA
  GGGGGAAATA TCGCCACCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320851724	CHEV_3_101088042	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222736643					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101191435 () rs orientation: forward

Symbol	Name	Function Class
Cd2	CD2 antigen	Intron
Rr581990	regulatory region 581990	513 bp distal
Rr581991	regulatory region 581991	1662 bp proximal
Tssr30894	transcription start site region 30894	17 bp upstream
Tssr34778	transcription start site region 34778	958 bp upstream
Tssr34779	transcription start site region 34779	150 bp upstream