rs222731058 SNP Detail

Summary

• ID
  rs222731058
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:10315799 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTGCAAAT AAAAACATTA
  TATACAAAAA CTTACCAGAC ACAAAGTTTT ATACAACTCA GTACTACATA TTTTATTGCA
  GCAAAATATT CATAAGACAA ATTTACCATT AAATGTGCAA TAACTGGCAT TATATGCATT
  ATAATGTTGT ACAGTCAACT CTCTATAGAT AGGGTCTTAA AGATATAATT AAATTGAATA
  K
  ATTGGCATTC ACCTTTCCTT TCTTCTTATA TTTGTGTCTT GAAGATTTTC ATGTCAGTAC
  ATAAAGATAT TTTTTTCTGC ATGCACATCA TCTTCTATGA GATGCATATA CCAAAGTTCA
  TTTTTTTCTA TCCCCATTGA AGACTAATAC ATTTCTATTT TTGTTGCTAC ATATTATGGT
  TCAGTGAACT GCCTTGTGCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320653147	CHEV_3_10250739	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222731058					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:10315799 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fabp12	fatty acid binding protein 12			Intron
				Noncoding-Transcript-Variant
Rr397603	regulatory region 397603			994 bp downstream
Rr573596	regulatory region 573596			949 bp distal
Rr573597	regulatory region 573597			1159 bp distal