rs222716879 SNP Detail

Summary

• ID
  rs222716879
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152062903 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGTAGCG TGGCACACAC
  CGCCCTGCTC TCCTCCTTTT TGTGAGAGCA AAGGAGCAGA AGGCCATGCT TAGGAGCAGG
  GTGCCATGGG GTTCTCGTGA CACAGGTGAG GGACCATTTG AGCCCACATA TGTTCCTAGG
  CAGATGTGCC CGTTTGTGGG GCAGCACACA GCCCTACACA GCTGAACGGC TTCACAAACA
  R
  TACTGGTCCT CTTCAAGAAA AGTAGGAGGT CCAGCTGCTC ACGTCAAGTG TCTGTTTTGA
  GGCAGGATCT CACAGTGTGT TCTAGATGAC ACCATACTTA CTATGTAGCC CAGGTTAGCC
  TTTAAGTTCA TCACTATGTA TCTCTTTACT CCTTTTTTTT TTTTAAGATT TATTTATTTA
  TTATATGTAA GTGCACTGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321433798	CHEV_4_151352555	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222716879					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152062903 () rs orientation: forward

Symbol	Name	Function Class
Dnajc11	DnaJ heat shock protein family (Hsp40) member C11	Intron
Rr605686	regulatory region 605686	511 bp distal
Rr605687	regulatory region 605687	213 bp proximal
Rr605688	regulatory region 605688	400 bp proximal
Rr605689	regulatory region 605689	1927 bp proximal