rs222706450 SNP Detail

Summary

• ID
  rs222706450
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132737686 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAGCAAAG AAGGCATCAG
  AAGCAGGTGG ATCAGGGAGT AAAGGCATTG CTAGAGAAGC TTAGGACATG GGGCAAGATG
  GACTAAGTTG GCAGACATTG GCCAAAGGAA TGTCAGACAC AGTCATGAGT TGGGATCAGC
  TCAGAAGCAG TCAATAGACA AGTAGCAGGG CAGTGATCAC TGCATCACTC ATCTGTTTCT
  Y
  CTGCAAACCT TATCTACCTT AGTGCCAAGG GAGGACACAT AGACACAGGG AAGAAAGATC
  AACAGTAAAG GATGGCGGGG ACGCGGGGGG GGGGGGGTGG AGTAGAGGGA ATCACCACTC
  TGTTACCGCC CAAGGGTTAA GGAAGGAAGG AAGCTTTGAA ATTATCCAGA TGCTGAATCT
  ACCACTTTCT AATCGGGACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363306869	MGP_WTSI_4_132566290	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222706450					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363306869	MGP_WTSI_4_132566290	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132737686 () rs orientation: forward

Symbol	Name	Function Class
Ahdc1	AT hook, DNA binding motif, containing 1	1111 bp upstream
Cpgi14982	CpG island 14982	404 bp proximal
Rr601151	regulatory region 601151	1792 bp distal
Rr601152	regulatory region 601152	360 bp distal
Rr601153	regulatory region 601153	1038 bp distal
Rr601154	regulatory region 601154	641 bp proximal
Rr601155	regulatory region 601155	1294 bp proximal
Rr601156	regulatory region 601156	1339 bp proximal
Rr601157	regulatory region 601157	1840 bp proximal
Tssr39436	transcription start site region 39436	1108 bp upstream
Tssr39437	transcription start site region 39437	1143 bp upstream
Tssr39438	transcription start site region 39438	1419 bp upstream