GAACAGAGCA TGCGCTGACC AACATGGCCC TTCCCATGGA TGCTGGTGTG GGGATCTTGG ATACCCTGGT CTCCTTTTAG CTAGGTTTCT CAAGTCTACC CTCATCATTT GTGCACGAAT CCCATGTTTT GTTGTGTTTC TGCAGTACTC TTCTGCTCTT CTATTTGTTA AAGAAAAAAT GGGTGTGGCT TCCCATGATC Y CCCACCCCCA CCCCACCCCG CCCCAAATAC TACCAGTCCA CACCTCCAAG AGTGGAGTGT GCCAAGTGGC CAGGCAGACT ATTTATTCAT AGCCCCCTTT GGTACTAAGG CAAGAAACAT GCTTCTTTGC AAACAAAGGT CATCTCTCAC TCCGCCATCA TTTGATGCTC CTCTCTACCT TCCTGAATCC CGCTGGACTG Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss355696510 | MGP_WTSI_2_131853975 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | C | T | T | C | T | T | T | C | C | T | T | T | T | C | T | T | T | T | T | T | C | T | T | T | T | T | T | T | T | T | T | T |
SNP Consensus Information | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
||||
rs222653128 | SNP | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | C | T | T | C | T | T | T | C | C | T | T | T | T | C | T | T | T | T | T | T | C | T | T | T | T | T | T | T | T | T | T | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss355696510 | MGP_WTSI_2_131853975 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | C/T |
Location: Chr2:131870159 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi12299 | CpG island 12299 | 824 bp proximal | ||||||
Gm75461 | predicted gene, 75461 | 1747 bp upstream | ||||||
Rassf2 | Ras association (RalGDS/AF-6) domain family member 2 | Intron | ||||||
Rr367316 | regulatory region 367316 | 1050 bp upstream | ||||||
Rr397324 | regulatory region 397324 | 1666 bp upstream | ||||||
Rr565378 | regulatory region 565378 | 489 bp distal | ||||||
Rr565379 | regulatory region 565379 | within coordinates | ||||||
Rr565380 | regulatory region 565380 | 1257 bp proximal | ||||||
Rr565381 | regulatory region 565381 | 1805 bp proximal | ||||||
Tssr20292 | transcription start site region 20292 | 555 bp downstream | ||||||
Tssr20293 | transcription start site region 20293 | 105 bp upstream | ||||||
Tssr20294 | transcription start site region 20294 | 1741 bp upstream | ||||||
Tssr26436 | transcription start site region 26436 | 922 bp downstream | ||||||
Tssr26437 | transcription start site region 26437 | 949 bp downstream | ||||||
Tssr26438 | transcription start site region 26438 | 1549 bp downstream | ||||||
Tssr26439 | transcription start site region 26439 | 1569 bp downstream | ||||||
Tssr26440 | transcription start site region 26440 | 1576 bp downstream | ||||||
Tssr26441 | transcription start site region 26441 | 1585 bp downstream | ||||||
Tssr26442 | transcription start site region 26442 | 1606 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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