rs222636898 SNP Detail

Summary

• ID
  rs222636898
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:70005810 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATGGTGGG AAGAAAGTTC
  TGGCGTTGGG TTGGGGCTTG TGGAGATGGC ACGCGAGGGG CGTGGCGAGC AGCTGACCCA
  GCAAAAACGC ACCAGGGCAC CCAAGGTGGA GCAGGGAAAG GGAGAGGGGA CAGTGGGCGG
  AGGAAGGATC CAGTTACCCT GTAGGATCCT AAGGACAGAG AAGGCCATGG TGGGGGAGCC
  R
  GGTGGAGGGG GCTGTTGGGG GGAGGGGGTG GAGACCCTCC CTAGCTGCTG GACATCCCTT
  TCCAGGCAGG AAAGGAAGCC TTGCCTGGTG TTAGCTTTAG CTGCCAGAAA GTTCTGTTCA
  ATTTCCGCGT CACATCACTG ACTGTACTTT TTCCAGTTTC TTGGACTCTG CAACTTACTG
  GGCTTAAAAA GAGTAAAGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss391453657	MGP_WTSI_14_70168168	EVA_MGPV3	EVA_MGPV3	f	SNP	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	G	A	G	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs222636898					SNP	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	G	A	G	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391453657	MGP_WTSI_14_70168168	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:70005810 () rs orientation: forward

Symbol	Name	Function Class
4930480K23Rik	RIKEN cDNA 4930480K23 gene	1248 bp downstream
Rr494753	regulatory region 494753	879 bp distal
Tnfrsf10b	tumor necrosis factor receptor superfamily, member 10b	Intron
Tssr126375	transcription start site region 126375	835 bp downstream
Tssr126376	transcription start site region 126376	808 bp downstream