rs222625556 SNP Detail

Summary

• ID
  rs222625556
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:15181709 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGTTTGCT GCAACTGTGG
  AGTTGCAACT GGTGGTCAAA GATAGCATTA CACGTGCCTA TCTTATCTCA CGACAAGTAG
  GTCGTAGTCG CTCTCTGTTT TTGTAGTCTG AAATACTAAA GTGATGTGTT AATGGATGTG
  GATTAATATG ATGGATATTT AGTTCAGCTC CAAGCGTATA TATTTATTAG AATACTTATT
  W
  AAATAAATAA ATAAATAAAT AAAATGAAAG TTTTCCCTCT CAAGTTCCAA CGATGACAAA
  TACACCTGTG ACTCCAAGGA GCCACACATT TGAAACACTA CGGAATTCTC TTTATTTAAG
  CTTAAATAGA AAATAAGTAT AGCACTCCAA ATACAGAGAC CACCATCTTT GAAGACTGGA
  ACTTCACAGT AATGCTACAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321751553	CHEV_6_15131710	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222625556					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:15181709 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Foxp2	forkhead box P2			Intron
				Noncoding-Transcript-Variant
Rr626646	regulatory region 626646			1069 bp proximal