rs222575839 SNP Detail

Summary

• ID
  rs222575839
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:82053279 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACA CACACACACA CACACACACA
  Y
  ACACACATAG CAGGGAAGGG GACAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320817904	CHEV_3_81949894	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222575839					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82053279 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13288	CpG island 13288	237 bp distal
Gm29921	predicted gene, 29921	426 bp downstream
Gm65571	predicted gene, 65571	243 bp downstream
Gucy1a1	guanylate cyclase 1, soluble, alpha 1	183 bp upstream
Rr578750	regulatory region 578750	910 bp distal
Rr578751	regulatory region 578751	409 bp distal
Rr578752	regulatory region 578752	within coordinates
Tssr33784	transcription start site region 33784	218 bp upstream
Tssr33785	transcription start site region 33785	129 bp upstream
Tssr33786	transcription start site region 33786	89 bp upstream