rs222565532 SNP Detail

Summary

• ID
  rs222565532
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:59548989 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGGTAAACA GCAACTCCCC
  GAGCGCCGCG GCCGCCTCAG CCTCCGCCCC CGCCAGCGCC GCGCACCATT TTCTGAGAGG
  AAGTGTGGGG AGTCCGGCCC GGCACCCCGG CCCTGGCTCG TCTCTGCTTC CCGAAGGCGC
  CCCGAGGCTG CGAGGGGCGG ACGTGACGGG GGCGCCGCGC GCAGGAAGCG GAGACCGCGG
  Y
  GGACAGACCC CCGCGCTCCC AAGGTCCCTG CCGTCGGGCT TAGCCCCGGG CCGCTCCTCC
  GCTAGCCGGC GTCGCGCCCT GCTCCCCGGC CTCGGCGGGA CGCGTCGCCG AGAGGAAACG
  AGGCCAGCGC AGCCCCGGAA CGGCCACCCG GCACTTACCC ATCCATGGCC CAGATGGAGG
  AGCGCGTTGT GCGGGGATTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321141175	CHEV_4_59561861	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222565532					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59548989 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1700018M17Rik	RIKEN cDNA 1700018M17 gene			582 bp upstream
Cpgi14347	CpG island 14347			within coordinates
Ptbp3	polypyrimidine tract binding protein 3			Intron
				mRNA-UTR
Rr593081	regulatory region 593081			972 bp distal
Rr593082	regulatory region 593082			263 bp distal
Rr593083	regulatory region 593083			within coordinates
Rr593084	regulatory region 593084			1050 bp proximal
Tssr41946	transcription start site region 41946			286 bp downstream
Tssr41947	transcription start site region 41947			325 bp downstream