rs222561872 SNP Detail

Summary

• ID
  rs222561872
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:114815675 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    cttatagtt tcagacatta gagtccatgt
  ccatcgtggc agggaacatg gtagcaggca ggcagacatg gcgctggaat aatagctgag
  agctcacttc ttgatctaca aacacaaggc agagggagag ctaactggga gtgtctgggc
  R
  tttgagacct ccacacccat cccccatgac atacctcctc caacaaagcc aagcctcctg
  atccttctca aacagttcca ccagctatgg actaagcatt caaatatgga gcctataggg
  cccattccca ttcccaccaT GTTGAGAAAA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321914850	CHEV_6_114788732	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222561872					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:114815675 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atg7	autophagy related 7			Intron
				Noncoding-Transcript-Variant
Gm67840	predicted gene, 67840			within coordinates
Rr636840	regulatory region 636840			214 bp proximal
Rr636841	regulatory region 636841			1565 bp proximal