rs222561686 SNP Detail

Summary

• ID
  rs222561686
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:123049293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCTATTTG ATTTGTGCAA
  GTTGTACATA GTAAAAGGTA ATTCTGAGAT ACTACTCAAG ATCTATTTGC CACCAAAGTC
  CAGTCCTAAC AATATGCAAA TGTCTCTCTT CCTTCCCCCC CTTCTTTTCT CCATCCATTC
  TTCCTTCCCC CCCCCTTCTT TTCTCCATCC ATTCTTCCTT CCCCATAAAA GCAGAATACC
  R
  CAATGCCTAA CATACTGCTG AAACAACCTG ATAGACCAAA GGCTTGGTCC ATTCAGGTAC
  CTGCAGAGTA TGACTACAAC AGGAAACTGA ATCATATGAA AAATAGATTA CCTATTATAT
  CTATCAAAGT ATGACTGTCA CCAGCTCTGT GACCAACAGA AGGTGACTTA ATTGCTCTGT
  GGGCCAGGTT CCTTATCTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321289765	CHEV_4_122832743	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222561686					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:123049293 () rs orientation: forward

Symbol	Name	Function Class
Rr599058	regulatory region 599058	165 bp distal
Rr599059	regulatory region 599059	283 bp distal
Rr599060	regulatory region 599060	within coordinates