rs222548680 SNP Detail

Summary

• ID
  rs222548680
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:24792423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCATGAAC TCGCACACAA
  AGCATCGTAC CTTCCCAGCA GGTAGCTGAA GGTCTCTTCC ATCACCTTGC CAATCCCCAG
  CTTGTCTACT TCAGTCATGG AGAAATACTT AATTCCCAGA GTTTTTATTA TATAGCTATA
  AAAGAACAGA GTGAAGTTAA TGACGGTTAG TAAGGCTGAC TTTTCTTACA TTTCCTTTGG
  K
  GGGAAAGATC ACTGTAAGTC CTGTGAACTG TGTATATATG CAGCTAGTTG TATTTTAAGA
  GTAAACTGTT ACAAATTGCC TAAATAATAC TATGTCTATA AGTGAATATA AACACGTATG
  CTTATGTAAA TACATGCATA TATACATATA TACATAGTGA CCAAAAAAAA AAAAAAAAAA
  AAACAACCTC TTAACAGATT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss379755413	MGP_WTSI_10_24636331	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	T	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222548680					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	T	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379755413	MGP_WTSI_10_24636331	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:24792423 () rs orientation: forward

Symbol	Name	Function Class
Arg1	arginase, liver	Intron
Tssr92746	transcription start site region 92746	888 bp downstream
Tssr92747	transcription start site region 92747	798 bp downstream
Tssr97085	transcription start site region 97085	1032 bp upstream
Tssr97086	transcription start site region 97086	970 bp upstream
Tssr97087	transcription start site region 97087	944 bp upstream
Tssr97088	transcription start site region 97088	884 bp upstream
Tssr97089	transcription start site region 97089	869 bp upstream
Tssr97090	transcription start site region 97090	838 bp upstream
Tssr97091	transcription start site region 97091	443 bp upstream
Tssr97092	transcription start site region 97092	424 bp upstream
Tssr97093	transcription start site region 97093	397 bp upstream
Tssr97094	transcription start site region 97094	386 bp upstream
Tssr97095	transcription start site region 97095	369 bp upstream
Tssr97096	transcription start site region 97096	84 bp upstream
Tssr97097	transcription start site region 97097	159 bp downstream
Tssr97098	transcription start site region 97098	307 bp downstream
Tssr97099	transcription start site region 97099	1422 bp downstream
Tssr97100	transcription start site region 97100	1460 bp downstream