rs222546836 SNP Detail

Summary

• ID
  rs222546836
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:140908710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGATTACC CAGAGTACAC
  TATGGTGGCA TACGAACTAC ACAACCATAT TTCACTAAAG CTGACATGCA TGGCATACCT
  ATGGCTCATC CTGAGCACAC CCTTGGCATA CCCGCTGCTC ACCCCGAGTA CGCCCTTGAT
  ACACCTATCT CTCATTTTTT CGATATACCC TTGGCACACC GGGTTTACAC ATTGAGAATA
  Y
  CCAGGACAAC CATATACGTA TATTCAGCTC ACCCCTGGCA TATCCACAAT ACACTCGAGT
  TCCCCTGTTG CTCACCCCAG ATGTAAGGAT GAATAAGAAT TACGTTTGTA GGGAAAAAAA
  ATGACTTAGT CAACCTCAAA CAACTAAAGC AGGCTTGTTC CAGAGACGTG GCTGTTAAAT
  TCTGGCCATT TGATGATCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373429774	MGP_WTSI_7_148514696	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222546836					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373429774	MGP_WTSI_7_148514696	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:140908710 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Deaf1	DEAF1, transcription factor			Intron
Rr400715	regulatory region 400715			643 bp downstream
Rr657908	regulatory region 657908			657 bp distal
Rr657909	regulatory region 657909			1193 bp distal
Rr657910	regulatory region 657910			within coordinates
Tmem80	transmembrane protein 80			Intron
				Noncoding-Transcript-Variant
Tssr69944	transcription start site region 69944			915 bp downstream
Tssr69945	transcription start site region 69945			658 bp downstream
Tssr69946	transcription start site region 69946			618 bp downstream
Tssr69947	transcription start site region 69947			556 bp downstream
Tssr69948	transcription start site region 69948			510 bp upstream
Tssr75631	transcription start site region 75631			1241 bp upstream
Tssr75632	transcription start site region 75632			1190 bp upstream
Tssr75633	transcription start site region 75633			1136 bp upstream
Tssr75634	transcription start site region 75634			1103 bp upstream
Tssr75635	transcription start site region 75635			1060 bp upstream
Tssr75636	transcription start site region 75636			1048 bp upstream
Tssr75637	transcription start site region 75637			588 bp upstream