rs222517779 SNP Detail

Summary

• ID
  rs222517779
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:161513319 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTGCCTATT AGAGAAGAGA TACATAGATA
  TCTCAGTCTA CTAACCTGAG GCCCCACGAG ATGGATATAA GCATCATTCT GTGAATGTGG
  TAAAAAAAAT AATAAAGAAC AGTCATTTCA ATTAGAAACT GAAGGAAGGT TAGAAAAGTG
  Y
  CATTTGGTGA GGATATTGAG AGGTGAGTTA AAAAAAAAAA ACCAAAAAAC TCCAAGACGA
  AGGACATTTG GAAGAGAATT TGAAAGACAC AAAGGGCACA AGATAAGTAA AACCAGAGAC
  AAGACCACGA GGATCAGTAA TCATCTGAGA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320081358	CHEV_1_163615881	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222517779					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161513319 () rs orientation: forward

Symbol	Name	Function Class
Rr421818	regulatory region 421818	1757 bp proximal
Rr421819	regulatory region 421819	1988 bp proximal