rs222475339 SNP Detail

Summary

• ID
  rs222475339
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:82461997 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCACAAAGG GAAGACTCTG
  GGTGAGAAGG CTTTACCAGG TGGCTAATGG CAGTGACTTG GAGTACTGTG TCCCCCATTA
  AAGGAAACAA CTGTGTTATG GGCTAAAATG CGTGCTTCCA AAATTCACCT TACCGTTCTA
  ATCCCTTGTA CCTCAGAGTG TGGTTGTATT TGGAGATAGG TTCATTTTTT TAAAAACTCC
  R
  TTCATTGATT ACTTGTTTAT TTGTTGTGTG TATGCACTTA TGGAGGCCAG AGGACAACTT
  GTAGGAGTTG GCCTTCCACT TTTTGGGTTC CAGGGATCAA ATTTAGACGA TGATCAGTTT
  TGATGATCAG TTTTGGCAAC AAGCACCTGC TGAGCCATGT CATCAGGCCC ACGTGACAGG
  TTCTTTAGAG ACATAATTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321185792	CHEV_4_82189664	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222475339					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:82461997 () rs orientation: forward

Symbol	Name	Function Class
Gm11266	predicted gene 11266	within coordinates
Rr594369	regulatory region 594369	1164 bp distal
Rr594370	regulatory region 594370	1431 bp distal
Rr594371	regulatory region 594371	410 bp distal