rs222444939 SNP Detail

Summary

• ID
  rs222444939
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:118455308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTTC AAATAAATAC ATAAATAAAG
  Y
  CATTAATTAA TTAGACAACA GTTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321924611	CHEV_6_118428365	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222444939					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118455308 () rs orientation: forward

Symbol	Name	Function Class
Rr637483	regulatory region 637483	26 bp distal
Rr637484	regulatory region 637484	93 bp proximal
Rr637485	regulatory region 637485	963 bp proximal
Tssr62662	transcription start site region 62662	890 bp downstream
Zfp9	zinc finger protein 9	Intron