rs222394153 SNP Detail

Summary

• ID
  rs222394153
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:140687274 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTAGTCTA GAAGAACCTA
  CCCAGTGCTG AGCCAGGGCC CCTGAGAAGC CAAGGCCACC TTACCATCTG TTGCGCAAGA
  CAACCACACC AGTCATAGAA TCTTAACTCA GCTGCCACAA CCCCTAGTGA TTCAGGCAAG
  GACGCTATAA GTCAAAAAGT GGCGAAGGAC TTGTCAATGG TCACATGGCC TTGAGGGGGC
  R
  ATCAAGGTAA CCCCCAGGGG TTCAGGCCTC TCCACACCCC CTTTAATGAG GCTACCTGGC
  AGAGAAGCCA GATTCAGGGT GAGTTCCCAG AAACTTGGCC CCATCTAGCC ATTCCTCCTG
  TCATGGTAAT TTCTCCAGTG TCTTCTAAAA GAGCCAGCGT GAGGAAACCC AAGACTATAA
  ACAGTGCCCT CCTCTGCCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363508334	MGP_WTSI_4_140515878	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222394153					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363508334	MGP_WTSI_4_140515878	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140687274 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15201	CpG island 15201	1146 bp proximal
Gm34431	predicted gene, 34431	within coordinates
Gm68270	predicted gene, 68270	373 bp downstream
Rr367768	regulatory region 367768	within coordinates
Rr603590	regulatory region 603590	1582 bp distal
Rr603591	regulatory region 603591	1907 bp distal
Rr603592	regulatory region 603592	750 bp proximal
Rr603593	regulatory region 603593	1211 bp proximal
Rr603594	regulatory region 603594	1267 bp proximal
Rr603595	regulatory region 603595	1324 bp proximal
Sdhb	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	1308 bp upstream
Tssr40003	transcription start site region 40003	1319 bp upstream
Tssr40004	transcription start site region 40004	1338 bp upstream
Tssr40005	transcription start site region 40005	1409 bp upstream
Tssr40006	transcription start site region 40006	1441 bp upstream