rs222385201 SNP Detail

Summary

• ID
  rs222385201
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:5509405 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACAATGTG GGCAATGGAA
  TACGTCTTCC TCTGTTTTTC TTGTCTCTGT AATTACCCTG TTGAGGATTG TGGAGGAGCC
  TGGTTTGTTA GGGCTTCCAG GGCCCAGGCT CTGACCCTAA CAACTCTTCT AACATCTTCA
  ATTTTAATAT CACCACACAG ACATACAGTT CTTTCCTCTG CTCTAAAAAT AAATTAGAGG
  R
  GCCGAAGTGC TGAGTTCAGA AAACATGTTT ATAATCTTGA GTGACAAATA GGGTCTGGCT
  GGATTTCAAC AGCCAGTGCT GGGGCCAAAG AGGACCCAGG CAGAGTACGA AAGGTCGGGG
  CTCTCCTGTT GCATCCTTTC TTCTGCCCTT CACACACTGG GCAGCACTAT CTTGTATTTT
  AATGTCCAGA CTCCTGAATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321729366	CHEV_6_5459405	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222385201					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:5509405 () rs orientation: forward

Symbol	Name	Function Class
Rr406959	regulatory region 406959	within coordinates
Rr626154	regulatory region 626154	1195 bp distal
Rr626155	regulatory region 626155	within coordinates
Tssr1775	transcription start site region 1775	1732 bp upstream
Tssr54862	transcription start site region 54862	1743 bp upstream