rs222376984 SNP Detail

Summary

• ID
  rs222376984
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107424092 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGTAGCT CTGGTATTCC
  TACCTCCATC TTACCTTGTC ACCGTCCACA GTGGTGCACA GGTCTGTGCA GGAGTTCCGG
  TCTCCTGTTG GACAGTTGAA GGGTTCTCTT CCGTGGTAAA GATGGCTTCT GTGCCAGCCC
  ACCCTGCCAT TCTGCCACTT TCACCATTGA TGGGGATAGA GACCCCAAAC TTGCCCAGAA
  Y
  GAAGCGATTT GCCCCAGTTT GCCCATCTAG AACAGAGCTG ACCCCGACCT CAGAGCTGGT
  CTCCCAGCTC TCAGACGGTT CTCCCAAGAA CTGTAGCTTC CCACACACCT GAGCTCAGAA
  TTCTGGGCCA TCCTGCCAAG AATCTTGTCC CCTTGCTGTG ACCGTGCCTC AGGCTCCTAC
  CCAGTCACAC CAACTCTTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321249098	CHEV_4_107239500	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222376984					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107424092 () rs orientation: forward

Symbol	Name	Function Class
Glis1	GLIS family zinc finger 1	Intron
Rr597017	regulatory region 597017	1428 bp proximal