rs222323218 SNP Detail

Summary

• ID
  rs222323218
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:120956477 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTGGGGGT TTTTTTGGTT
  TTTGTTTTTT GGTTTTTTTT TTTTTTTTTT TTTTTTTTTT TTTTTTGGTT TTTCAAGACA
  GGGTTCCTCT GTGTGGCCCT GGCTGTTCTG AACTCACTAT GTAGACCAGG CTGGCCTCAA
  ACTCAGAAAT CTGCCTGCAT CTGCCTCCCA AGTGCTGGGA CTAAAGGCAT GCACCACCAC
  R
  CCTGGCGGGG TAATTTTATA AAGAACTTTT GTCTAAGAAG GTATAAATTG CCAAAGAGAA
  GAAATAAAAT TTGGCATTTT GAGCTCTGCT CCATCCACCA AATGTATATG TGTGACTGTC
  TATAGGTACA TACATACATA CATACATACA TGTGTAGGTA TACGTGTATG TATGCAAGTA
  TACATGAACA CTTGTGGAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359466623	MGP_WTSI_3_120865746	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	A	G	G	G	G	G	A	A	A	A	G	G	G	G	G	G	A	A	A	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	A	A	G	G	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222323218					SNP	G	G	G	G	G	A	G	G	G	G	G	A	A	A	A	G	G	G	G	G	G	A	A	A	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	A	A	G	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359466623	MGP_WTSI_3_120865746	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:120956477 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr397969	regulatory region 397969			703 bp upstream
Rr584007	regulatory region 584007			961 bp distal
Rr584008	regulatory region 584008			537 bp proximal
Rr584009	regulatory region 584009			783 bp proximal
Rwdd3	RWD domain containing 3			Intron
				Noncoding-Transcript-Variant