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rs222309280 SNP Detail
Summary
  • ID
    rs222309280
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr3:19367518 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GTAATTTGAT CTTATTTATA
    CAAATGAGCA GTCCCTTTCC AAAACTAAGT CACTTCCTTA GTAAACGCTG GTCTGACTTG
    AGAGCCATGT CTTCCACCAT AGCATGCAGT ATTATGTTTT CTGTATTGTT GGGAAGGCAT
    TAGGGTGCAT CAGAGGAACT CCAGAAAGGG TGAGGGGAGA TGTTAAAGAG AGATTTCAAG
    R
    GATTGGCTCA AGATTGCTAA AGCTGATGTC TAGAGAGTAG ATGGACAGAC AGACAGTAAT
    AGTGGACTTT GCATTCTGGG ATCTGAAACT GATAAGAGAA AACTGCCAGG CTGAAAAGAT
    AGGCAGGATT TCTTTCTATG CTGGAGTCTT CAGAAAGAAA GTGCAAATCT TCACTCTTAA
    ACCCTTTAAC AGAATAGACA                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss357153172 MGP_WTSI_3_19213354 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G A G A A A A A G A A A G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs222309280 SNP A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G A G A A A A A G A A A G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss357153172 MGP_WTSI_3_19213354 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:19367518 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
3110037C07Rik RIKEN cDNA 3110037C07 gene 1528 bp downstream
Cpgi13002 CpG island 13002 1366 bp distal
Gm66414 predicted gene, 66414 within coordinates
Rr573970 regulatory region 573970 1707 bp distal
Rr573971 regulatory region 573971 399 bp distal
Tssr28512 transcription start site region 28512 1881 bp downstream
Tssr28513 transcription start site region 28513 1859 bp downstream
Tssr32699 transcription start site region 32699 1976 bp upstream
Tssr32700 transcription start site region 32700 1951 bp upstream
Tssr32701 transcription start site region 32701 1141 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory