rs222284291 SNP Detail

Summary

• ID
  rs222284291
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:28076948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACTGTCTC CCTCAAACAT
  CTTAGGTACC CTAGGAACGG ATCCACCCAA ACACTGAATT TGCAAACTAG GGACCTGCCC
  CAGCCCAGCA CCAGGGAAAT GGGTTATTGC ATCTTGGAAT GTCCAGAAGA TGGGACTTAT
  TAACTTAGAG GAGTGCCCCA GGTCCCCACA GCAATGAGCA GTCCCTGCCC TCTCTTTGAG
  M
  TCTAGCTGAT CCATACTGGG TAGGTAGGCA CTTGTCACTC AGAGACAGAG ATACGATTGA
  AGATGGGGAG ACGCCTTGGG GGTGCAGGGG TCTGGGGAGG CCCAAACACC CCTGCCTCAA
  AGACAGGTGA GTCTGACCCC CCCAGGCTGC TGCCGCTGCT GGCGTAGTCA TCAGGATCGG
  ATCCCAGAGA GTGGGCAGAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370858516	MGP_WTSI_7_29162542	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222284291					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370858516	MGP_WTSI_7_29162542	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28076948 () rs orientation: forward

Symbol	Name	Function Class
Gm44710	predicted gene 44710	1457 bp upstream
Gm73785	predicted gene, 73785	849 bp upstream
Gm73803	predicted gene, 73803	1951 bp upstream
Rr380568	regulatory region 380568	737 bp downstream
Rr400209	regulatory region 400209	1591 bp downstream
Rr400210	regulatory region 400210	1687 bp upstream
Rr644238	regulatory region 644238	1461 bp distal
Rr644239	regulatory region 644239	359 bp distal
Rr644240	regulatory region 644240	410 bp proximal
Rr644241	regulatory region 644241	967 bp proximal
Rr644242	regulatory region 644242	1468 bp proximal
Rr644243	regulatory region 644243	1722 bp proximal
Tssr2163	transcription start site region 2163	1833 bp downstream
Tssr2164	transcription start site region 2164	1966 bp downstream
Tssr65460	transcription start site region 65460	1731 bp downstream
Tssr65461	transcription start site region 65461	960 bp downstream
Tssr65462	transcription start site region 65462	785 bp downstream
Tssr65463	transcription start site region 65463	28 bp downstream
Tssr65464	transcription start site region 65464	473 bp upstream
Tssr65465	transcription start site region 65465	1829 bp upstream
Tssr71489	transcription start site region 71489	1939 bp upstream
Tssr71490	transcription start site region 71490	529 bp upstream
Tssr71491	transcription start site region 71491	432 bp upstream
Tssr71492	transcription start site region 71492	354 bp upstream
Tssr71493	transcription start site region 71493	304 bp upstream
Tssr71494	transcription start site region 71494	269 bp upstream
Tssr71495	transcription start site region 71495	239 bp upstream
Tssr71496	transcription start site region 71496	94 bp downstream
Tssr71497	transcription start site region 71497	342 bp downstream
Tssr71498	transcription start site region 71498	400 bp downstream
Tssr71499	transcription start site region 71499	493 bp downstream
Tssr71500	transcription start site region 71500	526 bp downstream
Tssr71501	transcription start site region 71501	544 bp downstream
Tssr71502	transcription start site region 71502	584 bp downstream
Tssr71503	transcription start site region 71503	620 bp downstream
Tssr71504	transcription start site region 71504	648 bp downstream
Tssr71505	transcription start site region 71505	664 bp downstream
Tssr71506	transcription start site region 71506	683 bp downstream
Tssr71507	transcription start site region 71507	724 bp downstream
Tssr71508	transcription start site region 71508	746 bp downstream
Tssr71509	transcription start site region 71509	784 bp downstream
Tssr71510	transcription start site region 71510	863 bp downstream
Tssr71511	transcription start site region 71511	902 bp downstream
Tssr71512	transcription start site region 71512	957 bp downstream
Tssr71513	transcription start site region 71513	1573 bp downstream
Tssr71514	transcription start site region 71514	1702 bp downstream
Tssr71515	transcription start site region 71515	1724 bp downstream
Zfp36	zinc finger protein 36	mRNA-UTR