rs222282199 SNP Detail

Summary

• ID
  rs222282199
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:130137333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCTCCCTC CCTACGGCTC
  CCGCTCCCCA GGGAGCGGCG GCGGCGGCGG GATGGCCAGG GCCCGCGGCC AGGCCCCGGG
  GAGCGGCGGG CGGCGGCGGC CGCGGCGGGG AGGCGCGGGG ACCGGGCCCC GGGGGGACTC
  GGCCGGTCTG CTGCTGCTCC TGCTGCAGGT GCTGCCGCCC GGGGCAGCGG CAGGCCCGGG
  R
  CGCCGGGGCA CTCGGGGGCC TGGCGGCGGC TGCGTCTGCT GGCCCGGCGC CGGCCCTGCT
  TTTCCACGGG ACGCGCGTCT GCTGCTGTTG CTGCCGCCCC GGCCACCACC GTCGCCGCCG
  CCGACCTCCA CGGCCGCAGC CTCCCCCTCT CGGATGGTAA TCAGCGCCCC GCGCGGGCGC
  CGCGGGCGGG CGGGGGAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355659367	MGP_WTSI_2_130121149	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	A	G	G	G	G	G	A	G	G	A	G	G	G	G	G	G	G	G	A	A	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222282199					SNP	G	G	G	G	A	G	G	G	G	G	A	G	G	A	G	G	G	G	G	G	G	G	A	A	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355659367	MGP_WTSI_2_130121149	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:130137333 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ebf4	early B cell factor 4			Coding-Synonymous
				Noncoding-Transcript-Variant
Gm74727	predicted gene, 74727			1851 bp upstream
Rr565034	regulatory region 565034			1862 bp distal
Rr565035	regulatory region 565035			1398 bp distal
Rr565036	regulatory region 565036			234 bp distal
Rr565037	regulatory region 565037			36 bp proximal
Rr565038	regulatory region 565038			291 bp proximal
Rr565039	regulatory region 565039			563 bp proximal
Tssr20205	transcription start site region 20205			177 bp downstream