rs222250406 SNP Detail

Summary

• ID
  rs222250406
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:116485911 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGTAAAT GTGGCTGGAA
  AATTCGCTAG GAGGTTAGGA GCACTTGTTA TTCTTGCAAA GGATCCTGTT TCAATTCCCA
  GCACCCACAA GGCGCCTCAC CACTTCGTTA AGCTCCAGGC ATGCATATGG TGCACAGACA
  TGGATGTAGG TAAAGCATTT ATTCACACAA AATGAAAAAA AAAAAAAAGA ACTAAAAATG
  R
  ATAAATAGAA ATAAGTGGGT TCCTTTAAAA AATAACTTGG GGGGGGCTGG TGAGATGGCT
  CAGTGGGTAA GAGCACCCGA CTGCTCTTCC AAAGGTCTGA AGTTCAAATC CCAGCAACCA
  CATGGTGGCT CACAACCATC TGTAACAAGA TCTGACGCCC TCTTCTGGAG TGTCTGAAGA
  CAGCTACAGT GTACTTACAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362953173	MGP_WTSI_4_116301319	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222250406					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362953173	MGP_WTSI_4_116301319	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116485911 () rs orientation: forward

Symbol	Name	Function Class
A430091L06Rik	RIKEN cDNA A430091L06 gene	27 bp downstream
Cpgi14636	CpG island 14636	1200 bp distal
Nasp	nuclear autoantigenic sperm protein (histone-binding)	mRNA-UTR
Rr398403	regulatory region 398403	1714 bp downstream
Rr398404	regulatory region 398404	1019 bp downstream
Rr398405	regulatory region 398405	550 bp downstream
Rr597936	regulatory region 597936	1247 bp distal
Rr597937	regulatory region 597937	1927 bp distal
Rr597938	regulatory region 597938	283 bp distal
Rr597939	regulatory region 597939	152 bp proximal
Tssr42894	transcription start site region 42894	1317 bp upstream
Tssr42895	transcription start site region 42895	1211 bp upstream
Tssr42896	transcription start site region 42896	806 bp upstream
Tssr42897	transcription start site region 42897	758 bp upstream
Tssr42898	transcription start site region 42898	726 bp upstream