rs222242316 SNP Detail

Summary

• ID
  rs222242316
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:58208418 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCATCAAGA ATGTACTTAG
  TTGAATGCAA AATACTAAAA ACTGAAAAGT GAGATGGGAC CCCATTCCCG TCCTCCCAGT
  CAGGTTACTC CAGAAGAAAA TGTAGATTTG AACACTGCTC CACAGTTGTC TATGTGGAAG
  AGGGACAAGG AACAGGGAGA AGAGAGACCT GGATCTTCTG AGAAGGGCTA AGATCTCATT
  Y
  GACTTGGAAC TCTTCTAGGA AGAGTTTCCA AATGTCATCT ACCCCGTGTT ATTTTAAACA
  CATCACTAAC AGCATTAGGA CTATGGCAAG GGCTGTATAC CCTATCTTGT ATGTCCCTTA
  GCCCCAACAA AAACCCCGGG GAGGTAATTA GTTGCTTTGA GACCTTCTTC TGGCTACAAG
  CAATGAGTAT CCAGCTTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss361664265	MGP_WTSI_4_58221290	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222242316					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361664265	MGP_WTSI_4_58221290	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58208418 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14336	CpG island 14336	1768 bp distal
Rr592872	regulatory region 592872	1332 bp distal
Rr592873	regulatory region 592873	1755 bp distal
Svep1	sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1	1822 bp upstream
Tssr41872	transcription start site region 41872	1898 bp upstream
Tssr41873	transcription start site region 41873	1874 bp upstream
Tssr41874	transcription start site region 41874	1843 bp upstream
Tssr41875	transcription start site region 41875	1831 bp upstream
Tssr41876	transcription start site region 41876	1802 bp upstream
Tssr41877	transcription start site region 41877	1770 bp upstream
Tssr41878	transcription start site region 41878	1745 bp upstream
Tssr41879	transcription start site region 41879	1721 bp upstream
Tssr41880	transcription start site region 41880	1628 bp upstream