rs222226233 SNP Detail

Summary

• ID
  rs222226233
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:54629847 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAAGATTT GTATTTGAAA
  ATATACACCA AAAAGCAGTA GGACTTAAAA ATAACTTCTG GGTGTCGCCT GCTGCAGGGC
  AGGCAGCTTG CTTGGTTTTG CTTCTGTGTG GAAGCCAGAC AGAGGCTGAT GCTGATCCGT
  CATCACGCCT GCCTTCTCTT GCTGTCTTCG TCTTTCTTCA GAACCTAAGA TTGCCCGACT
  Y
  CTAGTAAATT ATCCATGAAT GTTTTTAAGG AAATGTAAAT ACTTCACATG AAAACAATGG
  AAAGGCAGCT AATTCTTGTT TAAATCCTGA ATAGCTTCCT GGTGGTTCAC TCATTTTTAA
  CACCCAGCAG CAACAGCAGC AGACGCAGCT CCCTCACTTT ATACAACAAC CTCAGCAGCC
  TGCAGCTTCC GGTTCCCAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320772422	CHEV_3_54526348	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222226233					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54629847 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr397673	regulatory region 397673			1299 bp upstream
Rr397674	regulatory region 397674			1815 bp upstream
Rr576833	regulatory region 576833			1425 bp proximal
Supt20	SPT20 SAGA complex component			Intron
				Noncoding-Transcript-Variant