rs222210516 SNP Detail

Summary

• ID
  rs222210516
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:98779263 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTGCGGGCC GAGGGAACCC GAAGATCAGC
  CGAGGTGCAG GCCGAGGTGG ACTCTGGGAA GAAGAGTAGC TCGCTGAAGC TACGCCCGGC
  AAGCCAAGGA AAACCAAAAC AAGCCGCGCG CCCGGGGCAG CCCACGTGAT CACAACACAG
  Y
  GGCTGTACGC AAGGGAGCTG GGCGAGGGGG GGGGGGCAGG GGAGGGGACA AGACGAGCGG
  GATACCTAGC CGGGCGGCTC CCGGCTCCGC CCCACATGCT GCTCCCCATT GGTCTATTAG
  AATAGAGGAG GGCGGAGTCA CCCACAGGAG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325079231	CHEV_15_98711813	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222210516					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98779263 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rhebl1	Ras homolog enriched in brain like 1			Intron
				mRNA-UTR
Rr404611	regulatory region 404611			within coordinates
Rr509205	regulatory region 509205			within coordinates
Tssr136315	transcription start site region 136315			142 bp upstream
Tssr136316	transcription start site region 136316			66 bp upstream
Tssr136317	transcription start site region 136317			1 bp upstream
Tssr136318	transcription start site region 136318			6 bp downstream