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rs222207340 SNP Detail
Summary
  • ID
    rs222207340
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr6:117149638 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TCCCGGGAAG GGCCCTTGAA
CTTAGAGGGT CAAATACAAC TATTGATTCT GGGTGATCAC TAAGTTAATA AATGGCAGGA
TCCAGACTGA CACCCCTGAT CCCTGTTGAA GTTACATCCC TCTGAACGAC TGGTCAACTG
CAGGGCAGCC TGCTTGAAGA GGGTTACCTG TCCCTAGGAC ACTGAACAGG CATTTGTTTT
Y
CCTAGAAGAC AGTTCACCAG CTGGAGAGGA GTCGTCTCCC GTAGTTTCTG TTTGGTTGCT
TTTGGTTTTT GTTTGGTTTT GGTTTTTTAA TTATCTGGCA TCCAGGACTT GATGGAAAAT
AACCAGAGCT AAGCTCACCG GTTCATCTGC CCATTAGGAA GTTCTAGGGA TGGGAGAAAG
AACACGGCGT CAATTAACAA                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss369791557 MGP_WTSI_6_117122695 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs222207340 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss369791557 MGP_WTSI_6_117122695 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:117149638 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cxcl12 C-X-C motif chemokine ligand 12 Intron
Rr637288 regulatory region 637288 9 bp distal
Rr637289 regulatory region 637289 1189 bp proximal
Rr637290 regulatory region 637290 1374 bp proximal
Rr637291 regulatory region 637291 1425 bp proximal
Tssr58392 transcription start site region 58392 1190 bp downstream
Tssr58393 transcription start site region 58393 1171 bp downstream
Tssr58394 transcription start site region 58394 1131 bp downstream
Tssr58395 transcription start site region 58395 815 bp upstream
Tssr58396 transcription start site region 58396 831 bp upstream
Tssr58397 transcription start site region 58397 869 bp upstream
Tssr58398 transcription start site region 58398 895 bp upstream
Tssr58399 transcription start site region 58399 917 bp upstream
Tssr58400 transcription start site region 58400 945 bp upstream
Tssr58401 transcription start site region 58401 981 bp upstream
Tssr58402 transcription start site region 58402 1012 bp upstream
Tssr58403 transcription start site region 58403 1030 bp upstream
Tssr58404 transcription start site region 58404 1049 bp upstream
Tssr58405 transcription start site region 58405 1091 bp upstream
Tssr58406 transcription start site region 58406 1121 bp upstream
Tssr58407 transcription start site region 58407 1152 bp upstream
Tssr58408 transcription start site region 58408 1219 bp upstream
Tssr58409 transcription start site region 58409 1241 bp upstream
Tssr58410 transcription start site region 58410 1263 bp upstream
Tssr58411 transcription start site region 58411 1279 bp upstream
Tssr58412 transcription start site region 58412 1306 bp upstream
Tssr58413 transcription start site region 58413 1319 bp upstream
Tssr58414 transcription start site region 58414 1352 bp upstream
Tssr58415 transcription start site region 58415 1367 bp upstream
Tssr58416 transcription start site region 58416 1382 bp upstream
Tssr58417 transcription start site region 58417 1436 bp upstream
Tssr58418 transcription start site region 58418 1469 bp upstream
Tssr58419 transcription start site region 58419 1488 bp upstream
Tssr58420 transcription start site region 58420 1515 bp upstream
Tssr58421 transcription start site region 58421 1534 bp upstream
Tssr58422 transcription start site region 58422 1560 bp upstream
Tssr58423 transcription start site region 58423 1568 bp upstream
Tssr58424 transcription start site region 58424 1630 bp upstream
Tssr58425 transcription start site region 58425 1675 bp upstream
Tssr58426 transcription start site region 58426 1697 bp upstream
Tssr58427 transcription start site region 58427 1724 bp upstream
Tssr58428 transcription start site region 58428 1739 bp upstream
Tssr58429 transcription start site region 58429 1804 bp upstream
Tssr58430 transcription start site region 58430 1849 bp upstream
Tssr58431 transcription start site region 58431 1945 bp upstream
Tssr62617 transcription start site region 62617 879 bp downstream
Tssr62618 transcription start site region 62618 901 bp downstream
Tssr62619 transcription start site region 62619 937 bp downstream
Tssr62620 transcription start site region 62620 980 bp downstream
Tssr62621 transcription start site region 62621 1046 bp downstream
Tssr62622 transcription start site region 62622 1598 bp downstream
Tssr62623 transcription start site region 62623 1616 bp downstream
Tssr62624 transcription start site region 62624 1731 bp downstream
Tssr62625 transcription start site region 62625 1882 bp downstream
Tssr62626 transcription start site region 62626 1978 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory