rs222156152 SNP Detail

Summary

• ID
  rs222156152
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117148610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGCCCCAC TTTTCTCTCT
  ACACCTCCTC TAGGTAAACC AGTCAGCCTG AGCTACCGAT GCCCCTGCCG GTTCTTCGAG
  AGCCACATCG CCAGAGCCAA CGTCAAGCAT CTGAAAATCC TCAACACTCC AAACTGTGCC
  CTTCAGATTG TGTAAGTCCT AGCCGCCATC CCCCAAAGAG GAGCATGGTA TAGAAGCCTC
  R
  GACTTGGCAT AACTAGGGGC AGCTGTTACC ACCACCACCA CGGGGACACT GATATGCCAT
  CAGACATGGG TTTCAAAGGA TACTTTTGTT CCCCAGAGCC CTGATGTCCT CAGTGTTTCT
  CACTCTTGCT TTCCAAGCTG TTTCTTGCAG CACAGTGGGC CGCCTCTCTA CAGAAAAAGC
  CATGGACTTG ATGGAGGTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369791540	MGP_WTSI_6_117121667	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222156152					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369791540	MGP_WTSI_6_117121667	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117148610 () rs orientation: forward

Symbol	Name	Function Class
Cxcl12	C-X-C motif chemokine ligand 12	Intron
Rr637287	regulatory region 637287	1026 bp distal
Rr637288	regulatory region 637288	782 bp proximal
Tssr58391	transcription start site region 58391	1644 bp downstream
Tssr58392	transcription start site region 58392	162 bp downstream
Tssr58393	transcription start site region 58393	143 bp downstream
Tssr58394	transcription start site region 58394	103 bp downstream
Tssr58395	transcription start site region 58395	1843 bp upstream
Tssr58396	transcription start site region 58396	1859 bp upstream
Tssr58397	transcription start site region 58397	1897 bp upstream
Tssr58398	transcription start site region 58398	1923 bp upstream
Tssr58399	transcription start site region 58399	1945 bp upstream
Tssr58400	transcription start site region 58400	1973 bp upstream
Tssr62617	transcription start site region 62617	1907 bp downstream
Tssr62618	transcription start site region 62618	1929 bp downstream
Tssr62619	transcription start site region 62619	1965 bp downstream