rs222149849 SNP Detail

Summary

• ID
  rs222149849
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135672480 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACAGTGAC TCACAACCAC
  CCGTAATGAG ATCTGACGGC CTCTTCTGGG CAGGAGTGAG TGGGGTGGGC CGGAGAAAGC
  AGAGGTCCTA AATTCAATTC CCAACAACCA CATGAAGGCT CACAACCATC TGTACAGCTA
  CACTGTACTC ATATACATAA AATAAGTAAA TATTAAAAAA AAAACAAAGT AGAGGTGGAG
  R
  CAGGTTTGTT TTTGCTTGAT GGGAGCAGAA AGCCTTGTGG TTACAAAAGC AGGCCAGAGC
  AGGTTAGCAA AAATTCCTGT AAGTGCCTGA GGGTCAAGCT GACCTCAATG TCAGCCCAAG
  GTCAGGTCAG GATTTAGCAA AGATGTTTTT CTTGCTTCAC TCTTATGGCC TCACAGGTGT
  TCTACATAGA CTTACATGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363379123	MGP_WTSI_4_135501084	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222149849					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363379123	MGP_WTSI_4_135501084	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135672480 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15085	CpG island 15085	1106 bp proximal
Gm69275	predicted gene, 69275	870 bp downstream
Hmgcl	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	1296 bp upstream
Rr602209	regulatory region 602209	1346 bp distal
Rr602210	regulatory region 602210	1291 bp distal
Rr602211	regulatory region 602211	487 bp proximal
Rr602212	regulatory region 602212	1198 bp proximal
Rr602213	regulatory region 602213	1290 bp proximal
Tssr39660	transcription start site region 39660	1278 bp upstream
Tssr44007	transcription start site region 44007	1196 bp downstream