rs222145366 SNP Detail

Summary

• ID
  rs222145366
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:110145876 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAAAGAGC CTCATGTTTA
  TTACGTGTGC AGACCACTCC TTTTGCTCAG CTGAACAGGA GGTATTTTGC CTCTCCCTTC
  GCTTCTTTCC CCAGCCCCTG CTTTCTTACA AGAGGTACAA AGGGACAATT AGCAAGTATG
  AGGTGGTGTA TATAGACTGT ATGCTTATAC GACACATTTC ATAGCCTCTG TATCACTACA
  Y
  TTGCAAAACT ACCCACAGGA TGTTTTGGGC CTGCATTTTT AAGTGGCTTA CCTGAGACCC
  TTTGCCTCAT ACCTATGAAG AAGGGTAACA CCCTATGTAT TTAATAAACT TCACAGTTTA
  ATAAACTTTT CCAATAAATG CACAGAGGTA AAAAAAAAAA TAGTCCATGT AGTGTTTAAT
  TTTTGCCTGA AGTTGACAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321255945	CHEV_4_109961284	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222145366					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:110145876 () rs orientation: forward

Symbol	Name	Function Class
Elavl4	ELAV like RNA binding protein 4	Intron
Rr597418	regulatory region 597418	1801 bp distal
Rr597419	regulatory region 597419	1300 bp distal
Rr597420	regulatory region 597420	662 bp distal
Rr597421	regulatory region 597421	1583 bp proximal
Tssr42789	transcription start site region 42789	1793 bp upstream
Tssr42790	transcription start site region 42790	1145 bp upstream