rs222140128 SNP Detail

Summary

• ID
  rs222140128
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116458015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTAAAATCC TGACCACCAC CGGGCAGTGG TGGCGCATGC
  CTTTAATCCC AGCACTTGGG AGGCAGAGGC AGGTGGATTT CTGAGTTCAA GGCCAGCCTG
  K
  TCTACAGAGT GAGTTCCAGG ACAGCCAGAG CTATACAGAG AAACCAAACC AAACCAAAAA
  AACCAAAACC AAACCAAAAC AAAAAAACCC TGACCACCA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321277568	CHEV_4_116273423	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222140128					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116458015 () rs orientation: forward

Symbol	Name	Function Class
Ccdc17	coiled-coil domain containing 17	552 bp downstream
Nasp	nuclear autoantigenic sperm protein (histone-binding)	234 bp downstream
Rr597935	regulatory region 597935	1954 bp proximal