rs222120597 SNP Detail

Summary

• ID
  rs222120597
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74792931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCTGGTCAC TCTCTGAGGC CAGCTGGCAG
  CTCTTCCCCC ATGCCATCTC TGCAACAGGA GAAGGCTCAA TGAGTGGGTG AGAGCACGGT
  GGGAAGAAGC GATAAACTGG GGGTGAGAGG GGGGAGGAGA GGAGGAAGGA AGGGGCTAAC
  Y
  TACTCCCCTG CTGTTGTCCA GAGCCTGGTC CATCTGAGCC TCCCCATTAC CATTTCCTTG
  TTCCCTGAGT CTGTCAAGGG CAGACTTTAT AGCTTCCTCT TGCACACATT AAAGAATGTT
  GGCTCTAGAG GTGGAATATT GAACTTGGAG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320348834	CHEV_2_74800644	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222120597					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74792931 () rs orientation: forward

Symbol	Name	Function Class
Igs15	intergenic site 15	within coordinates
Rr559413	regulatory region 559413	1681 bp proximal
Rr559414	regulatory region 559414	1947 bp proximal