rs222043218 SNP Detail

Summary

• ID
  rs222043218
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52787539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GAGCATACT GAGCATGCGC TAGGCTATTT
  TGACAAGTCA CTCATTTCTC CCTGAATTAT AGCTGACTCT GGAAACATGC TCAGTCGTGG
  ATATGAACAG AAAAGAACAG ACTCCTTCGG GTAATTTTTA AAAACATTTC AATAAGCCCC
  Y
  CTCATCAAAT GGGTTTTTAG AAAGTCGTGT CTCTTGAGTC TGCCTCTTCC AAGAGGGGCT
  ACAAGTTTTT CCATGATAAA CATGCCCCGC TCAGGGCAGA GACCTAGAGG AACTTGCCTC
  TCTTGTGATC CTGGGAATTT TATTTATTCA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320765670	CHEV_3_52684040	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222043218					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52787539 () rs orientation: forward

Symbol	Name	Function Class
Rr576595	regulatory region 576595	1300 bp distal
Rr576596	regulatory region 576596	92 bp distal
Rr576597	regulatory region 576597	1957 bp proximal