rs222025975 SNP Detail

Summary

• ID
  rs222025975
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132484916 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATTGAAGG CATTTCGGTT
  CAGTCAGCCT CCAGAAAATG CAGGAAGCAC CATCGACTTA CTGTCTTCTC CTTGCAGAGC
  TGCAACACGG ATGGATGAAT GAATTAGCTA CCTGTGGCAA CCAAAGAGCC TTAAAAGCTA
  GCCTTAAAAC CAGATGTGCA AGCCCTCTCT CAAGGATAGC CCTGGCACTC TTGAGGCAGG
  R
  GGATTAGGAG TTCAAGGCCA TCCTAGGCTA CTTTGATGAC TTTGGGGCCA GTCTGGGCTA
  CCTGAAACGA TATTACAAAC AAACAACAAA CAGAGTTATT TGCTGATCGT GCCAGGAGAT
  GAGGACTACT AGAAACTGGG CAAAAGGGAG ATAAGATGGT GTTGTCCCCC TGAACATGCC
  TTGAGAGCCT GAGGGCTGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321336231	CHEV_4_132313520	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222025975					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132484916 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14971	CpG island 14971	274 bp distal
Gm70165	predicted gene, 70165	597 bp upstream
Rr601063	regulatory region 601063	364 bp distal
Rr601064	regulatory region 601064	90 bp distal
Smpdl3b	sphingomyelin phosphodiesterase, acid-like 3B	358 bp upstream
Tssr43702	transcription start site region 43702	498 bp upstream
Tssr43703	transcription start site region 43703	453 bp upstream
Tssr43704	transcription start site region 43704	418 bp upstream
Tssr43705	transcription start site region 43705	365 bp upstream
Tssr43706	transcription start site region 43706	346 bp upstream